NumS is a Numerical computing library for Python that Scales your workload to the cloud. It is an array abstraction layer on top of distributed memory systems that implements the NumPy API, extending NumPy to scale horizontally, as well as provide inter-operation parallelism (e.g. automatic parallelization of Python loops). NumS differentiates itself from related solutions by implementing the NumPy API, and providing tighter integration with the Python programming language by supporting loop parallelism and branching. Currently, NumS implements a Ray system interface, S3 and distributed filesystems for storage, and NumPy as a backend for CPU-based array operations.
The NumS team takes inspiration from early innovations in programming language design, such as Fortran, Matlab, and NumPy. Thus, our goal is to simultaneously provide a simple and performant API by implementing the NumPy API as closely as possible, and maintaining a system architecture that enables runtime optimizations based on state-of-the-art discrete optimization techniques. Below are a few key features that separate NumS from related libraries.
- NumS is an eager evaluation distributed array library, which allows for efficient and seamless integration with branch and loop commands in Python.
- The NumS BlockArray is a mutable data structure, just like NumPy arrays.
- The NumS optimizer eliminates the need to learn a new programming model to achieve
data (and model) parallel training.
First, obtain the latest release of NumS by simply running
pip install nums.
NumS provides concrete implementations of the NumPy API,
providing a clear API with code hinting when used in conjunction with
IDEs (e.g. PyCharm) and interpreters (e.g. iPython, Jupyter Notebook)
that provide such functionality.
Below is a quick snippet that simply samples a few large arrays and
performs basic array operations.
import nums.numpy as nps # Compute some products. x = nps.random.rand(10**8) # Note below the use of `get`, which blocks the executing process until # an operation is completed, and constructs a numpy array # from the blocks that comprise the output of the operation. print((x.T @ x).get()) x = nps.random.rand(10**4, 10**4) y = nps.random.rand(10**4) print((x @ y).shape) print((x.T @ x).shape) # NumS also provides a speedup on basic array operations, # such array search. x = nps.random.permutation(10**8) idx = nps.where(x == 10**8 // 2) # Whenever possible, NumS automatically evaluates boolean operations # to support Python branching. if x[idx] == 10**8 // 2: print("The numbers are equal.") else: raise Exception("This is impossible.")
NumS provides an optimized I/O interface for fast persistence of block arrays.
See below for a basic example.
import nums import nums.numpy as nps # Write an 800MB object in parallel, utilizing all available cores and # write speeds available to the OS file system. x1 = nps.random.rand(10**8) # We invoke `get` to block until the object is written. # The result of the write operation provides status of the write # for each block as a numpy array. print(nums.write("x.nps", x1).get()) # Read the object back into memory in parallel, utilizing all available cores. x2 = nums.read("x.nps") assert nps.allclose(x1, x2)
NumS automatically loads CSV files in parallel as distinct arrays,
and intelligently constructs a partitioned array for block-parallel linear algebra operations.
# Specifying has_header=True discards the first line of the CSV. dataset = nums.read_csv("path/to/csv", has_header=True)
In this example, we'll run logistic regression on a
bimodal Gaussian. We'll begin by importing the necessary modules.
import nums.numpy as nps from nums.models.glms import LogisticRegression
NumS initializes its system dependencies automatically as soon as an operation is performed.
Thus, importing modules triggers no systems-related initializations.
NumS is based on NumPy's parallel random number generators.
You can sample billions of random numbers in parallel, which are automatically
block-partitioned for parallel linear algebra operations.
Below, we sample an 800MB bimodal Gaussian, which is asynchronously generated and stored
by the implemented system's workers.
size = 10**8 X_train = nps.concatenate([nps.random.randn(size // 2, 2), nps.random.randn(size // 2, 2) + 2.0], axis=0) y_train = nps.concatenate([nps.zeros(shape=(size // 2,), dtype=nps.int), nps.ones(shape=(size // 2,), dtype=nps.int)], axis=0)
NumS's logistic regression API follows the scikit-learn API, a
familiar API to the majority of the Python scientific computing community.
model = LogisticRegression(solver="newton-cg", penalty="l2", C=10) model.fit(X_train, y_train)
We train our logistic regression model using the Newton method.
NumS's optimizer automatically optimizes scheduling of
operations using a mixture of block-cyclic heuristics, and a fast,
tree-based optimizer to minimize memory and network load across distributed memory devices.
For tall-skinny design matrices, NumS will automatically perform data-parallel
distributed training, a near optimal solution to our optimizer's objective.
We evaluate our dataset by computing the accuracy on a sampled test set.
X_test = nps.concatenate([nps.random.randn(10**3, 2), nps.random.randn(10**3, 2) + 2.0], axis=0) y_test = nps.concatenate([nps.zeros(shape=(10**3,), dtype=nps.int), nps.ones(shape=(10**3,), dtype=nps.int)], axis=0) print("train accuracy", (nps.sum(y_train == model.predict(X_train)) / X_train.shape).get()) print("test accuracy", (nps.sum(y_test == model.predict(X_test)) / X_test.shape).get())
We perform the
get operation to transmit
the computed accuracy from distributed memory to "driver" (the locally running process) memory.
Training on HIGGS
Below is an example of loading the HIGGS dataset
partitioning it for training, and running logistic regression.
import nums import nums.numpy as nps from nums.models.glms import LogisticRegression higgs_dataset = nums.read_csv("HIGGS.csv") y, X = higgs_dataset[:, 0].astype(nps.int), higgs_dataset[:, 1:] model = LogisticRegression(solver="newton-cg") model.fit(X, y) y_pred = model.predict(X) print("accuracy", (nps.sum(y == y_pred) / X.shape).get())
NumS is currently supported on Linux-based systems running Python 3.6, 3.7, and 3.8.
Currently, only CPU-based workloads are supported; we are working on providing GPU support.
To install NumS on Ray with CPU support, simply run the following command.
pip install nums
We are working on providing support for conda installations, but in the meantime,
run the following with your conda environment activated.
pip install nums # Run below to have NumPy use MKL. conda install -fy mkl conda install -fy numpy scipy
To run NumS with S3,
configure credentials for access by following instructions here: