PyIOmica (pyiomica)
This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.
PyIOmica Installation Instructions
A. INSTALLATION
Pre-Installation Requirements
To install PyIOmica on any platform you need Python version 3.7 or higher
Installation Instructions
- To install the current release from PyPI (Python Package Index) use pip:
pip install pyiomica
Alternatively, you can install directly from github using:
pip install git+https://github.com/gmiaslab/pyiomica/
or
git clone https://github.com/gmiaslab/pyiomica/
python setup.py install
B. RUNNING PyIOmica
After installation you can run:
>>> import pyiomica
C. DOCUMENTATION
Documentation for PyIOmica is built-in and is available through the help() functionality in Python.
Also the documentation is available at Read the Docs: https://pyiomica.readthedocs.io/en/latest/