Spectral decomposition for characterizing long-range interaction profiles in Hi-C maps.
Snakemake workflow for the unsupervised method presented in Spracklin, Abdennur et al., 2021.
- Place supplementary bigwig file information in
config/track_metadata.tsvto include in graphical outputs. Must be tab-delimited, including header. Must have columns:
Name: a display name
ID: a unique identifier to use in the database (can be the same as Name)
FileFormat: must be the string
Path: a local path to the file
# Generate pre-aggregated supplementary bigwig tracks if provided $ snakemake make_track_db --force --cores all # Run the pipeline $ snakemake --cores all