Monod: a package for CME inference from seq data

PyPI version

This repository contains the current version of the Monod package, which implements procedures for fitting and analyzing stochastic models of transcription and sequencing.

Examples and tutorials are given at the example repository. For theoretical background, see Gorin & Pachter 2021. For usage instructions, see the readthedocs website. For a sample workflow applied to four small datasets, see the Colaboratory notebook.


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