Sequences The Monod package fits CME models to sequencing data The Monod package fits CME models to sequencing data 25 July 2022
Message Generate (message) sequence diagrams from TLA+ state traces Generate (message) sequence diagrams from TLA+ state traces 05 March 2022
Filter Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo 18 February 2022
Decrypt En- and decrypting text-messages by creating a key with of the fibonacci-sequence En- and decrypting text-messages by creating a key with of the fibonacci-sequence 17 February 2022
Sequences Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification 16 February 2022
Fibonacci Generating the Fibonacci sequence is a classic recursive problem Generating the Fibonacci sequence is a classic recursive problem 15 February 2022
Transformer Minimal implementaion of Decision Transformer: Reinforcement Learning via Sequence Modeling in PyTorch for mujoco control tasks in OpenAI gym Minimal implementaion of Decision Transformer: Reinforcement Learning via Sequence Modeling in PyTorch for mujoco control tasks in OpenAI gym 14 February 2022
Analysis Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2 Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2 10 February 2022
Arduino Doughskript interpreter for converting simple command sequences into executable Arduino C++ code Doughskript interpreter for converting simple command sequences into executable Arduino C++ code 10 February 2022
Graph Iterative refinement graph neural network for antibody sequence-structure co-design (RefineGNN) Iterative refinement graph neural network for antibody sequence-structure co-design (RefineGNN) 03 February 2022
Calculator Simple software to calculate susequence with highest sum Simple software to calculate susequence with highest sum 01 February 2022
Algorithms Sequential prediction learning framework and algorithm Sequential prediction learning framework and algorithm 25 January 2022
GUI Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids 23 January 2022
seq2seq Train large COMET (T5-3B/GPT2-XL) with small memory (on 11GB memory GPUs like 1080/2080) using DeepSpeed Train large COMET (T5-3B/GPT2-XL) with small memory (on 11GB memory GPUs like 1080/2080) using DeepSpeed 23 January 2022
Time Series Sequitur : A Library of autoencoders for sequential data Sequitur : A Library of autoencoders for sequential data 23 January 2022
Machine Learning A machine learning project that predicted binding sites of AP1 transcription factor, using ChIP-Seq data and local DNA shape information AP1 Transcription Factor Binding Site Prediction 22 January 2022
Tool A pipeline to analyse transposon directed insertion-site sequencing A set of tools to analyse the output from TraDIS analyses 22 January 2022
Pipeline Pipeline code for Sequential-GAM(Genome Architecture Mapping) Pipeline code for Sequential-GAM(Genome Architecture Mapping) 19 January 2022
PyTorch ParaGen - A PyTorch deep learning framework for parallel sequence generation ParaGen - A PyTorch deep learning framework for parallel sequence generation 19 January 2022
seq2seq Use the Seq2Seq method to implement machine translation and introduce Attention mechanism to improve the results Use the Seq2Seq method to implement machine translation and introduce Attention mechanism to improve the results 19 January 2022
Deep Learning Deep learning transformer model that generates unique music sequences Deep learning transformer model that generates unique music sequences 18 January 2022
Sequences SCROLLS: Standardized CompaRison Over Long Language Sequences SCROLLS: Standardized CompaRison Over Long Language Sequences 12 January 2022
Algorithms Example of a Viterbi algorithm applied to a hidden Markov model on DNA sequence Example of a Viterbi algorithm applied to a hidden Markov model on DNA sequence 11 January 2022
Sequences Creates a magic square by randomly generating a list until the list happens to be a magic square Creates a magic square by randomly generating a list until the list happens to be a magic square 01 January 2022
GUI An easy to use GUI based video to image sequence converter (and vice versa) An easy to use GUI based video to image sequence converter (and vice versa) 27 December 2021
Sequences Sequence lineage information extracted from RKI sequence data repo Sequence lineage information extracted from RKI sequence data repo 26 December 2021
MediaPipe Extracts essential Mediapipe face landmarks and arranges them in a sequenced order Extracts essential Mediapipe face landmarks and arranges them in a sequenced order 26 December 2021
Toolkit A toolkit to generate MR sequence diagrams A toolkit to generate MR sequence diagrams 24 December 2021
Scripts The scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel structural variation The scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel structural variation 23 December 2021
Scripts Assembly of a pan-genome for global cattle reveals missing sequence and novel structural variation, providing new insights into their diversity and evolution history Assembly of a pan-genome for global cattle reveals missing sequence and novel structural variation, providing new insights into their diversity and evolution history 23 December 2021
Sequences A modular sequencer based on Pi Pico & EuroPi A modular sequencer based on Pi Pico & EuroPi 23 December 2021
Sequences Dragmap-meth: Fast and accurate aligner for bisulfite sequencing reads using dragmap Dragmap-meth: Fast and accurate aligner for bisulfite sequencing reads using dragmap 19 December 2021
Sequences Annotates sequences with Eggnog-mapper and hhblits against PDB70 Annotates sequences with Eggnog-mapper and hhblits against PDB70 18 December 2021
Annotation Annotates sequences with Eggnog-mapper and hhblits against PDB70 Annotates sequences with Eggnog-mapper and hhblits against PDB70 18 December 2021
3D A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files 14 December 2021
Attention Anchor-Based Spatio-Temporal Attention 3-D Convolutional Networks for Dynamic 3-D Point Cloud Sequences Anchor-Based Spatio-Temporal Attention 3-D Convolutional Networks for Dynamic 3-D Point Cloud Sequences 11 December 2021
Sequences ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data 11 December 2021
Barcode Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python 08 December 2021
Sequences Simple, high-school-leveled sequence library written in Python Simple, high-school-leveled sequence library written in Python 05 December 2021
Transformer Big Bird: Transformers for Longer Sequences Big Bird: Transformers for Longer Sequences 04 December 2021
Deep Learning Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thalia Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thalia 04 December 2021
Transformer Official codebase for Decision Transformer: Reinforcement Learning via Sequence Modeling Official codebase for Decision Transformer: Reinforcement Learning via Sequence Modeling 03 December 2021
PyTorch PyTorch trainer and model for Sequence Classification PyTorch trainer and model for Sequence Classification 03 December 2021
Deep Learning Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana 03 December 2021
Function A functional mutable sequence inheriting from Python's built-in list A functional mutable sequence inheriting from Python's built-in list 03 December 2021
Tool Tools to create pixel-wise object masks, bounding box labels and 3D object model for object sequences filmed Tools to create pixel-wise object masks, bounding box labels and 3D object model for object sequences filmed 29 November 2021
Recommend A PaddlePaddle implementation of Time Interval Aware Self-Attentive Sequential Recommendation A PaddlePaddle implementation of Time Interval Aware Self-Attentive Sequential Recommendation 28 November 2021
Graph Statistical tests for the sequential locality of graphs Statistical tests for the sequential locality of graphs 25 November 2021
Sequences PRIP:A Protein-RNA Interface Predictor Based on Semantics of Sequences PRIP:A Protein-RNA Interface Predictor Based on Semantics of Sequences 25 November 2021
Scripts A socket script to obtain chinese phones-sequence for any english word A socket script to obtain chinese phones-sequence for any english word 18 November 2021